Content-type: text/html Manpage of TS


Section: User Commands (1)
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ts - Tomosynthesis reconstruction.  


ts [OPTIONS...] <data file> <result>  


The program reads file which describes the images containing TS projections and performs TS reconstruction of the requested plane.



<data file>
Input file describing the projection images.

 Must consist only of the strings containing the the following strings:

    <float> <string>
The first component (float value) represents the angle in degree at which the projection was recorded, while the second component gives the file name of the image with the projection. For example:

    -25.5 ../acquire/projection_-25.5.tif
The path to the file is relative to the path of the data file.
Output reconstructed image.
Defaults to "ts-<data file>-<plane>.tif".


-C, --contrast=STRING
Input component.
Type of the contrast presented in the sinogram. Must be one of the following strings (case insensitive):
A, ABS, ABSORPTION - for the absorption contrast
R, REF, REFRACTION - for the refraction contrast
P, PHS, PHASE - for the phase contrast
F, FLT, FILTERED - for the pre-filtered contrast
-y, --plane=INT
Plane of the reconstruction.
Relative to the rotation center.
-c, --center=FLOAT
Rotation center.
Deviation of the rotation axis from the center of the sinogram.
Allows you to erase some minor artifacts in the reconstructed image which come from the inaccurate rotation position. In most real CT or TS experiments the rotation center of the sample is not exactly in the center of the recoded projection. Moreover, the rotation axis may be inclined from the vertical orientation. If the inclination of the rotation axis is noticeable for your desired spatial resolution then you should rotate the images before the actual reconstruction. You can do it in the batch using "mogrify" command from the ImageMagick package with the -rotate option.
-i, --int
Output image(s) as integer.
If this option is not set, the output format defaults to the 32-bit float-point TIFF (regardless of the extension). If it is set, the image format is derived from the output file extension (TIFF if the extension does not correspond to any format).

Standard options.

-v, --verbose
Verbose output.
-?, --usage
Outputs brief usage message.
-h, --help
Outputs help message.
When combined with the "-v|--verbose" option may output more detailed message.



ctas(1), ctas-bg(1), ctas-ct(1), ctas-ct-abs(1), ctas-ct-dei(1), ctas-ct-edei(1), ctas-ct-ipc(1), ctas-dei(1), ctas-edei(1), ctas-ipc(1), ctas-f2i(1), ctas-ff(1), ctas-sino(1), ctas-sino-abs(1), ctas-sino-dei(1), ctas-sino-ipc(1), ctas-ts(1), ctas-ct-line(1)



Standard options.

This document was created by man2html, using the manual pages.
Time: 06:49:20 GMT, July 29, 2010